Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AL138709.1-201ENST00000614840 1693 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ECM1P1-201ENST00000604092 1279 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 PRSS30P-206ENST00000641773 873 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AL354989.2-201ENST00000435838 1540 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 C2orf69P2-201ENST00000562032 1123 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 RN7SL219P-201ENST00000582872 296 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AC007191.1-201ENST00000623179 2995 ntBASIC14.36□□□□□ -0.11
CCDC88CQ9P219 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CCDC88CQ9P219 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AC007787.1-201ENST00000588095 1583 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AL157414.3-201ENST00000624276 1954 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 BX640514.1-201ENST00000583223 1918 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AC004945.1-201ENST00000416738 983 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AC015656.1-201ENST00000624209 3578 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AC018529.2-202ENST00000611482 3087 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 KRT8P35-201ENST00000483942 1338 ntBASIC14.35□□□□□ -0.11
CCDC88CQ9P219 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC88CQ9P219 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC88CQ9P219 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC88CQ9P219 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
CCDC88CQ9P219 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC88CQ9P219 MIR663B-201ENST00000408361 115 ntBASIC14.34□□□□□ -0.11
CCDC88CQ9P219 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.34□□□□□ -0.11
CCDC88CQ9P219 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms