Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VTA1Q9NP79 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.67■□□□□ 0.26
VTA1Q9NP79 AC103702.1-201ENST00000548801 2630 ntBASIC16.66■□□□□ 0.26
VTA1Q9NP79 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 AC133540.1-201ENST00000620845 1019 ntBASIC16.66■□□□□ 0.26
VTA1Q9NP79 SNX1-214ENST00000625244 324 ntTSL 5 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VTA1Q9NP79 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.66■□□□□ 0.26
VTA1Q9NP79 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC019193.1-201ENST00000506678 823 ntBASIC16.65■□□□□ 0.26
VTA1Q9NP79 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 RBM8B-201ENST00000555532 525 ntBASIC16.65■□□□□ 0.26
VTA1Q9NP79 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 AC006480.2-201ENST00000609770 1337 ntBASIC16.65■□□□□ 0.26
VTA1Q9NP79 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
VTA1Q9NP79 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VTA1Q9NP79 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VTA1Q9NP79 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VTA1Q9NP79 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VTA1Q9NP79 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 IGLV3-15-201ENST00000518356 244 ntBASIC16.64■□□□□ 0.25
VTA1Q9NP79 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC16.64■□□□□ 0.25
VTA1Q9NP79 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms