Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 AL035456.1-201ENST00000456064 1369 ntBASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CHMP1AQ9HD42 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TARDBPP1-201ENST00000442013 1203 ntBASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 DNAJB3-201ENST00000446806 729 ntBASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 RN7SL828P-201ENST00000607615 303 ntBASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MIR6080-201ENST00000617359 66 ntBASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CHMP1AQ9HD42 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
CHMP1AQ9HD42 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms