Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC005229.1-201ENST00000392885 409 ntBASIC11.64□□□□□ -0.55
CCDC140Q96MF4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC007969.1-201ENST00000433675 447 ntBASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC245100.3-201ENST00000441281 285 ntBASIC11.64□□□□□ -0.55
CCDC140Q96MF4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 AC105233.6-201ENST00000642093 218 ntBASIC11.64□□□□□ -0.55
CCDC140Q96MF4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
CCDC140Q96MF4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC003102.2-201ENST00000589195 1469 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC113367.3-201ENST00000508316 1912 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 POM121L8P-201ENST00000417732 1281 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 TLE1P1-201ENST00000422965 589 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 NME2P1-201ENST00000426182 414 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 POM121L9P-203ENST00000441984 1285 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 COX20P2-201ENST00000452636 358 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SLC25A47P1-201ENST00000531577 414 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 RN7SL48P-201ENST00000579283 293 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC233724.13-201ENST00000598383 410 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 ENPP7P14-201ENST00000621765 1040 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SALL4P5-201ENST00000419001 1760 ntBASIC11.63□□□□□ -0.55
CCDC140Q96MF4 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms