Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC20.86■□□□□ 0.93
USP47Q96K76 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP47Q96K76 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 AC018735.1-201ENST00000437208 1502 ntBASIC20.85■□□□□ 0.93
USP47Q96K76 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 MIR663B-201ENST00000408361 115 ntBASIC20.85■□□□□ 0.93
USP47Q96K76 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.85■□□□□ 0.93
USP47Q96K76 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC20.85■□□□□ 0.93
USP47Q96K76 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.85■□□□□ 0.93
USP47Q96K76 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 AC020907.1-201ENST00000616460 1350 ntBASIC20.85■□□□□ 0.93
USP47Q96K76 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 BRWD1P1-201ENST00000401091 371 ntBASIC20.85■□□□□ 0.93
USP47Q96K76 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC20.85■□□□□ 0.93
USP47Q96K76 AL591846.1-201ENST00000451736 433 ntBASIC20.85■□□□□ 0.93
USP47Q96K76 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC20.85■□□□□ 0.93
USP47Q96K76 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.85■□□□□ 0.93
USP47Q96K76 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP47Q96K76 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.85■□□□□ 0.93
USP47Q96K76 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
USP47Q96K76 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP47Q96K76 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC20.84■□□□□ 0.93
USP47Q96K76 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC20.84■□□□□ 0.93
USP47Q96K76 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.84■□□□□ 0.93
USP47Q96K76 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
USP47Q96K76 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 AC140479.7-201ENST00000636301 2332 ntBASIC20.84■□□□□ 0.93
USP47Q96K76 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP47Q96K76 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
USP47Q96K76 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC20.84■□□□□ 0.93
USP47Q96K76 CICP12-201ENST00000455801 843 ntBASIC20.84■□□□□ 0.93
USP47Q96K76 AC108725.1-201ENST00000495472 409 ntBASIC20.84■□□□□ 0.93
USP47Q96K76 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC20.84■□□□□ 0.93
USP47Q96K76 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
USP47Q96K76 AC103988.2-201ENST00000561804 725 ntBASIC20.84■□□□□ 0.93
USP47Q96K76 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USP47Q96K76 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC20.84■□□□□ 0.93
USP47Q96K76 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.84■□□□□ 0.93
USP47Q96K76 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP47Q96K76 AC068587.10-201ENST00000641210 219 ntBASIC20.84■□□□□ 0.93
USP47Q96K76 LINC00552-201ENST00000625151 2579 ntBASIC20.84■□□□□ 0.93
USP47Q96K76 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 LINC02228-204ENST00000642115 2962 ntBASIC20.83■□□□□ 0.93
USP47Q96K76 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
USP47Q96K76 AP001267.2-201ENST00000532619 2086 ntBASIC20.83■□□□□ 0.93
USP47Q96K76 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP47Q96K76 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP47Q96K76 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC20.83■□□□□ 0.92
USP47Q96K76 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms