Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 KRT223P-202ENST00000449164 1292 ntBASIC18■□□□□ 0.47
CHMP4CQ96CF2 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 GAPDHP40-201ENST00000505218 1006 ntBASIC18■□□□□ 0.47
CHMP4CQ96CF2 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 REXO1L4P-201ENST00000605109 1937 ntBASIC18■□□□□ 0.47
CHMP4CQ96CF2 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AL390755.1-201ENST00000623716 2027 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 CICP23-201ENST00000605013 2741 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 KRT43P-201ENST00000434019 910 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 RPS2P32-201ENST00000439199 892 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AC012441.1-201ENST00000446669 685 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AC007551.1-201ENST00000457394 519 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AC106886.1-201ENST00000568660 600 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AC093813.1-201ENST00000605066 256 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AC133552.6-201ENST00000613406 534 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 COX11-210ENST00000639671 696 ntBASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.99■□□□□ 0.47
CHMP4CQ96CF2 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AJ011931.1-201ENST00000618749 2492 ntBASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AC138969.2-201ENST00000532739 9932 ntBASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AC092933.1-201ENST00000393644 945 ntBASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms