Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 RN7SL11P-201ENST00000471305 293 ntBASIC15.07■□□□□ 0
HDDC3Q8N4P3 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC097724.1-201ENST00000609581 426 ntBASIC15.07■□□□□ 0
HDDC3Q8N4P3 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 LILRP1-201ENST00000444199 1370 ntBASIC15.07■□□□□ 0
HDDC3Q8N4P3 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDDC3Q8N4P3 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 INE2-201ENST00000630399 1874 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 RN7SKP175-201ENST00000408472 289 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 AL354877.1-201ENST00000424412 413 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC016700.1-201ENST00000429424 312 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 SERPINA13P-202ENST00000478994 924 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC021723.1-201ENST00000486306 515 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC005730.2-201ENST00000564549 1184 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AL136301.1-201ENST00000615830 422 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC002472.3-201ENST00000640124 621 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC126365.1-201ENST00000578585 1514 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC126755.1-201ENST00000525846 6405 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDDC3Q8N4P3 AC020910.5-201ENST00000623668 1865 ntBASIC15.06■□□□□ 0
HDDC3Q8N4P3 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
HDDC3Q8N4P3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
HDDC3Q8N4P3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms