Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AL390754.1-201ENST00000619088 582 ntBASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AC073592.8-201ENST00000624126 511 ntBASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
DEPDC4Q8N2C3 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 AL928921.2-201ENST00000641325 2442 ntBASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 AC241585.1-201ENST00000433527 519 ntBASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 BCRP1-201ENST00000444246 691 ntBASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 KATNBL1P4-201ENST00000503545 918 ntBASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 FOXO1B-201ENST00000504678 1527 ntBASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
DEPDC4Q8N2C3 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.12□□□□□ -0.15
DEPDC4Q8N2C3 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms