Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 FAM86B3P-203ENST00000523992 854 ntBASIC19.99■□□□□ 0.79
NPHP3Q7Z494 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 AC055811.3-201ENST00000584952 686 ntBASIC19.99■□□□□ 0.79
NPHP3Q7Z494 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AC010491.1-201ENST00000563101 2797 ntBASIC19.98■□□□□ 0.79
NPHP3Q7Z494 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 CYP2T1P-202ENST00000641596 2535 ntBASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AL135901.1-201ENST00000451812 333 ntBASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AC068867.1-201ENST00000559855 150 ntBASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AC007250.1-201ENST00000608934 338 ntBASIC19.98■□□□□ 0.79
NPHP3Q7Z494 AC009145.4-201ENST00000625119 1294 ntBASIC19.98■□□□□ 0.79
NPHP3Q7Z494 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP3Q7Z494 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.97■□□□□ 0.79
NPHP3Q7Z494 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 RPL18AP8-201ENST00000486071 528 ntBASIC19.97■□□□□ 0.79
NPHP3Q7Z494 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 RN7SL357P-201ENST00000581065 298 ntBASIC19.97■□□□□ 0.79
NPHP3Q7Z494 DGAT2L7P-201ENST00000602462 744 ntBASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AC012073.1-201ENST00000606114 1108 ntBASIC19.97■□□□□ 0.79
NPHP3Q7Z494 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP3Q7Z494 AL590440.2-201ENST00000641973 1595 ntBASIC19.97■□□□□ 0.79
NPHP3Q7Z494 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.96■□□□□ 0.79
NPHP3Q7Z494 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms