Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 AC132192.2-201ENST00000596206 1147 ntBASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 AC126177.1-201ENST00000547829 2218 ntBASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 LINC01101-201ENST00000622953 1884 ntBASIC18.63■□□□□ 0.57
UBE3BQ7Z3V4 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 DPM3-202ENST00000368399 517 ntBASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 EIF4HP1-201ENST00000453115 687 ntBASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC138649.2-201ENST00000615886 705 ntBASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC244394.1-201ENST00000435000 1665 ntBASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 AC023157.3-201ENST00000619086 2088 ntBASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBE3BQ7Z3V4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 DEF8-202ENST00000418391 852 ntTSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 AC104073.2-201ENST00000453737 312 ntBASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 ALG3P1-201ENST00000508806 1114 ntBASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 AC005740.2-201ENST00000511085 419 ntBASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 NEU3-202ENST00000526068 431 ntTSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 BX088702.1-201ENST00000610784 235 ntBASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBE3BQ7Z3V4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.6■□□□□ 0.57
UBE3BQ7Z3V4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.6■□□□□ 0.57
UBE3BQ7Z3V4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBE3BQ7Z3V4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
UBE3BQ7Z3V4 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms