Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.3■□□□□ 0.04
USP39Q53GS9 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.3■□□□□ 0.04
USP39Q53GS9 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP39Q53GS9 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.3■□□□□ 0.04
USP39Q53GS9 KRT8P14-201ENST00000414254 1442 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.3■□□□□ 0.04
USP39Q53GS9 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
USP39Q53GS9 NKAIN1P1-201ENST00000435754 582 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 MPRIPP1-201ENST00000452433 1089 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 RN7SL720P-201ENST00000488178 304 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 AC044849.1-201ENST00000519737 1188 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.3■□□□□ 0.04
USP39Q53GS9 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.3■□□□□ 0.04
USP39Q53GS9 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 AL161772.1-201ENST00000610494 4412 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.3■□□□□ 0.04
USP39Q53GS9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP39Q53GS9 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP39Q53GS9 AC138035.3-201ENST00000622706 2791 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 TNRC18P2-201ENST00000417666 2714 ntBASIC15.3■□□□□ 0.04
USP39Q53GS9 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
USP39Q53GS9 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
USP39Q53GS9 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP39Q53GS9 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP39Q53GS9 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP39Q53GS9 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
USP39Q53GS9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.29■□□□□ 0.04
USP39Q53GS9 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 AC007787.1-201ENST00000588095 1583 ntBASIC15.29■□□□□ 0.04
USP39Q53GS9 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.29■□□□□ 0.04
USP39Q53GS9 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 MAGEA5-201ENST00000446757 942 ntBASIC15.29■□□□□ 0.04
USP39Q53GS9 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 OR10B1P-201ENST00000601666 907 ntBASIC15.29■□□□□ 0.04
USP39Q53GS9 AP001505.2-201ENST00000616815 443 ntBASIC15.29■□□□□ 0.04
USP39Q53GS9 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
USP39Q53GS9 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.29■□□□□ 0.04
USP39Q53GS9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.29■□□□□ 0.04
USP39Q53GS9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP39Q53GS9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP39Q53GS9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
USP39Q53GS9 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP39Q53GS9 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms