Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HTR7P1-202ENST00000624664 4411 ntBASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AL590440.2-201ENST00000641973 1595 ntBASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 Z69890.1-201ENST00000382990 339 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC026434.2-201ENST00000506094 1078 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AP003398.1-201ENST00000531124 318 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC008825.2-201ENST00000603374 718 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC011471.3-201ENST00000623576 402 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC138035.3-201ENST00000622706 2791 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC138701.2-201ENST00000553634 226 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC093752.3-201ENST00000567343 901 ntBASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC88AQ3V6T2 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 AC073869.2-201ENST00000417338 1026 ntBASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 AC084752.1-201ENST00000509766 622 ntBASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 FAM86KP-201ENST00000509817 987 ntBASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 THY1-209ENST00000580275 578 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC88AQ3V6T2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.96■□□□□ 0.46
CCDC88AQ3V6T2 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.46
CCDC88AQ3V6T2 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 CICP12-201ENST00000455801 843 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 AP000911.2-201ENST00000534330 502 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 AC007952.4-201ENST00000573866 637 ntBASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms