Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TPM4P67936 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
TPM4P67936 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 HTR5BP-201ENST00000430851 1154 ntBASIC16.94■□□□□ 0.3
TPM4P67936 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.94■□□□□ 0.3
TPM4P67936 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.94■□□□□ 0.3
TPM4P67936 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.94■□□□□ 0.3
TPM4P67936 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.94■□□□□ 0.3
TPM4P67936 LINC00628-201ENST00000628516 1289 ntBASIC16.94■□□□□ 0.3
TPM4P67936 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.94■□□□□ 0.3
TPM4P67936 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TPM4P67936 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TPM4P67936 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.94■□□□□ 0.3
TPM4P67936 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
TPM4P67936 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
TPM4P67936 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
TPM4P67936 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TPM4P67936 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.93■□□□□ 0.3
TPM4P67936 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 RBPMS2P1-201ENST00000437762 623 ntBASIC16.93■□□□□ 0.3
TPM4P67936 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 SLC25A1P1-201ENST00000528351 927 ntBASIC16.93■□□□□ 0.3
TPM4P67936 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.93■□□□□ 0.3
TPM4P67936 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.93■□□□□ 0.3
TPM4P67936 AC022145.2-201ENST00000598203 171 ntBASIC16.93■□□□□ 0.3
TPM4P67936 AL589739.1-201ENST00000607720 493 ntBASIC16.93■□□□□ 0.3
TPM4P67936 AC120114.3-201ENST00000611923 658 ntBASIC16.93■□□□□ 0.3
TPM4P67936 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 CETN4P-206ENST00000642099 2168 ntBASIC16.93■□□□□ 0.3
TPM4P67936 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.93■□□□□ 0.3
TPM4P67936 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.93■□□□□ 0.3
TPM4P67936 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TPM4P67936 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TPM4P67936 CICP20-201ENST00000443330 2801 ntBASIC16.92■□□□□ 0.3
TPM4P67936 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TPM4P67936 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.92■□□□□ 0.3
TPM4P67936 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TPM4P67936 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TPM4P67936 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
TPM4P67936 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.92■□□□□ 0.3
TPM4P67936 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
TPM4P67936 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TPM4P67936 AC004066.1-201ENST00000502488 802 ntBASIC16.92■□□□□ 0.3
TPM4P67936 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TPM4P67936 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TPM4P67936 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TPM4P67936 AC025048.3-201ENST00000590609 569 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms