Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
SOX3P41225 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.23□□□□□ -0.13
SOX3P41225 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 AC112492.5-201ENST00000421897 457 ntBASIC14.23□□□□□ -0.13
SOX3P41225 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.23□□□□□ -0.13
SOX3P41225 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.23□□□□□ -0.13
SOX3P41225 AC068587.3-201ENST00000526613 355 ntBASIC14.23□□□□□ -0.13
SOX3P41225 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.23□□□□□ -0.13
SOX3P41225 PTP4A1P2-201ENST00000546033 454 ntBASIC14.23□□□□□ -0.13
SOX3P41225 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 AP001063.1-201ENST00000568332 529 ntBASIC14.23□□□□□ -0.13
SOX3P41225 AC009486.1-201ENST00000569860 813 ntBASIC14.23□□□□□ -0.13
SOX3P41225 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.23□□□□□ -0.13
SOX3P41225 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.23□□□□□ -0.13
SOX3P41225 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX3P41225 AC097376.2-205ENST00000610159 5334 ntBASIC14.23□□□□□ -0.13
SOX3P41225 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SOX3P41225 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 AL138799.1-201ENST00000448213 1675 ntBASIC14.23□□□□□ -0.13
SOX3P41225 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SOX3P41225 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX3P41225 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
SOX3P41225 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SOX3P41225 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SOX3P41225 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SOX3P41225 AC079776.1-201ENST00000401540 1152 ntBASIC14.22□□□□□ -0.13
SOX3P41225 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX3P41225 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX3P41225 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX3P41225 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms