Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SCN4AP35499 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SCN4AP35499 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.21■□□□□ 0.34
SCN4AP35499 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.2■□□□□ 0.34
SCN4AP35499 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SCN4AP35499 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SCN4AP35499 NRADDP-201ENST00000437305 691 ntBASIC17.2■□□□□ 0.34
SCN4AP35499 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.2■□□□□ 0.34
SCN4AP35499 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.2■□□□□ 0.34
SCN4AP35499 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC17.2■□□□□ 0.34
SCN4AP35499 AC140658.4-201ENST00000561990 352 ntBASIC17.2■□□□□ 0.34
SCN4AP35499 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.2■□□□□ 0.34
SCN4AP35499 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
SCN4AP35499 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.2■□□□□ 0.34
SCN4AP35499 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.2■□□□□ 0.34
SCN4AP35499 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.2■□□□□ 0.34
SCN4AP35499 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SCN4AP35499 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SCN4AP35499 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.19■□□□□ 0.34
SCN4AP35499 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SCN4AP35499 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 AC092570.1-201ENST00000414446 469 ntBASIC17.19■□□□□ 0.34
SCN4AP35499 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 GRPEL2P1-201ENST00000453145 339 ntBASIC17.19■□□□□ 0.34
SCN4AP35499 KRT18P37-201ENST00000520711 1282 ntBASIC17.19■□□□□ 0.34
SCN4AP35499 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC17.19■□□□□ 0.34
SCN4AP35499 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.19■□□□□ 0.34
SCN4AP35499 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SCN4AP35499 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.19■□□□□ 0.34
SCN4AP35499 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.19■□□□□ 0.34
SCN4AP35499 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.19■□□□□ 0.34
SCN4AP35499 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 PSAT1P2-201ENST00000426107 972 ntBASIC17.19■□□□□ 0.34
SCN4AP35499 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC17.19■□□□□ 0.34
SCN4AP35499 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.19■□□□□ 0.34
SCN4AP35499 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 AC092896.1-201ENST00000465850 380 ntBASIC17.19■□□□□ 0.34
SCN4AP35499 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.19■□□□□ 0.34
SCN4AP35499 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SCN4AP35499 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SCN4AP35499 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SCN4AP35499 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SCN4AP35499 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.18■□□□□ 0.34
SCN4AP35499 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.18■□□□□ 0.34
SCN4AP35499 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC17.18■□□□□ 0.34
SCN4AP35499 CTBP2P6-201ENST00000526402 1229 ntBASIC17.18■□□□□ 0.34
SCN4AP35499 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.18■□□□□ 0.34
SCN4AP35499 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SCN4AP35499 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC17.18■□□□□ 0.34
SCN4AP35499 AP005264.5-201ENST00000590066 467 ntBASIC17.18■□□□□ 0.34
SCN4AP35499 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SCN4AP35499 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms