Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TPST2P1-201ENST00000564073 1102 ntBASIC15.13■□□□□ 0.01
VCANP13611 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.13■□□□□ 0.01
VCANP13611 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.13■□□□□ 0.01
VCANP13611 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 ALG1L15P-201ENST00000482834 794 ntBASIC15.12■□□□□ 0.01
VCANP13611 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC15.12■□□□□ 0.01
VCANP13611 AC011431.1-201ENST00000512971 230 ntBASIC15.12■□□□□ 0.01
VCANP13611 MYL6-215ENST00000549566 685 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC15.12■□□□□ 0.01
VCANP13611 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
VCANP13611 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 AL513523.2-202ENST00000427283 2040 ntBASIC15.12■□□□□ 0.01
VCANP13611 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 AC006449.6-201ENST00000612330 2296 ntBASIC15.12■□□□□ 0.01
VCANP13611 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
VCANP13611 OR5BD1P-201ENST00000532527 817 ntBASIC15.12■□□□□ 0.01
VCANP13611 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 IFNL3P1-201ENST00000595082 501 ntBASIC15.12■□□□□ 0.01
VCANP13611 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC15.12■□□□□ 0.01
VCANP13611 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 LINC00528-201ENST00000600723 2160 ntBASIC15.12■□□□□ 0.01
VCANP13611 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VCANP13611 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.12■□□□□ 0.01
VCANP13611 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
VCANP13611 FUCA1P1-201ENST00000374476 1351 ntBASIC15.12■□□□□ 0.01
VCANP13611 FKBP4P8-201ENST00000610931 1369 ntBASIC15.12■□□□□ 0.01
VCANP13611 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.12■□□□□ 0.01
VCANP13611 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VCANP13611 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC15.11■□□□□ 0.01
VCANP13611 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 PEBP1P3-201ENST00000455475 548 ntBASIC15.11■□□□□ 0.01
VCANP13611 TNRC18P3-201ENST00000441896 2691 ntBASIC15.11■□□□□ 0.01
VCANP13611 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.11■□□□□ 0.01
VCANP13611 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC15.11■□□□□ 0.01
VCANP13611 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC15.11■□□□□ 0.01
VCANP13611 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VCANP13611 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VCANP13611 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
VCANP13611 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 KRT18P44-201ENST00000416086 1285 ntBASIC15.11■□□□□ 0.01
VCANP13611 AC010894.2-201ENST00000444196 561 ntTSL 3 BASIC15.11■□□□□ 0.01
VCANP13611 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC15.11■□□□□ 0.01
VCANP13611 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.11■□□□□ 0.01
VCANP13611 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.11■□□□□ 0.01
VCANP13611 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC15.11■□□□□ 0.01
VCANP13611 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms