Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.2■□□□□ 0.02
VIMP08670 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
VIMP08670 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
VIMP08670 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC15.2■□□□□ 0.02
VIMP08670 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VIMP08670 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 FAM220BP-201ENST00000377689 816 ntBASIC15.19■□□□□ 0.02
VIMP08670 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
VIMP08670 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.19■□□□□ 0.02
VIMP08670 AC093909.1-201ENST00000504731 1122 ntBASIC15.19■□□□□ 0.02
VIMP08670 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.19■□□□□ 0.02
VIMP08670 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.19■□□□□ 0.02
VIMP08670 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
VIMP08670 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 AL031008.1-201ENST00000619963 541 ntBASIC15.19■□□□□ 0.02
VIMP08670 AL691432.3-201ENST00000621860 400 ntBASIC15.19■□□□□ 0.02
VIMP08670 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 LILRP1-201ENST00000444199 1370 ntBASIC15.19■□□□□ 0.02
VIMP08670 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.19■□□□□ 0.02
VIMP08670 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VIMP08670 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.19■□□□□ 0.02
VIMP08670 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.19■□□□□ 0.02
VIMP08670 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 INE2-201ENST00000630399 1874 ntBASIC15.18■□□□□ 0.02
VIMP08670 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 AC025580.3-201ENST00000617932 1424 ntBASIC15.18■□□□□ 0.02
VIMP08670 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.18■□□□□ 0.02
VIMP08670 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 AC015818.8-201ENST00000587907 1519 ntBASIC15.18■□□□□ 0.02
VIMP08670 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC15.18■□□□□ 0.02
VIMP08670 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.18■□□□□ 0.02
VIMP08670 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.18■□□□□ 0.02
VIMP08670 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VIMP08670 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
VIMP08670 AC092910.1-201ENST00000482027 1129 ntBASIC15.18■□□□□ 0.02
VIMP08670 TMEM198B-204ENST00000484016 896 ntBASIC15.18■□□□□ 0.02
VIMP08670 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.18■□□□□ 0.02
VIMP08670 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.18■□□□□ 0.02
VIMP08670 UNC93B6-202ENST00000528242 690 ntBASIC15.18■□□□□ 0.02
VIMP08670 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.18■□□□□ 0.02
VIMP08670 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms