Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 CICP24-201ENST00000605464 2705 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 MIR1247-201ENST00000408206 136 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 GCOM2-201ENST00000509133 1104 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 AL022328.3-201ENST00000607943 679 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 MIR6787-201ENST00000616675 61 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 GPR182-203ENST00000622922 591 ntBASIC16.12■□□□□ 0.17
CNTN3Q9P232 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
CNTN3Q9P232 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.12■□□□□ 0.17
CNTN3Q9P232 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.11■□□□□ 0.17
CNTN3Q9P232 AC004898.1-201ENST00000451057 766 ntBASIC16.11■□□□□ 0.17
CNTN3Q9P232 AC022494.1-201ENST00000466044 728 ntBASIC16.11■□□□□ 0.17
CNTN3Q9P232 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 MIR4783-201ENST00000580343 82 ntBASIC16.11■□□□□ 0.17
CNTN3Q9P232 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 BX088702.1-201ENST00000610784 235 ntBASIC16.11■□□□□ 0.17
CNTN3Q9P232 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CNTN3Q9P232 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 SHC1P1-201ENST00000425230 1745 ntBASIC16.11■□□□□ 0.17
CNTN3Q9P232 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CNTN3Q9P232 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 GPAA1P2-201ENST00000417923 928 ntBASIC16.1■□□□□ 0.17
CNTN3Q9P232 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 AC099548.2-209ENST00000480264 625 ntBASIC16.1■□□□□ 0.17
CNTN3Q9P232 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.1■□□□□ 0.17
CNTN3Q9P232 AC005730.2-201ENST00000564549 1184 ntBASIC16.1■□□□□ 0.17
CNTN3Q9P232 AC009955.4-201ENST00000597192 544 ntBASIC16.1■□□□□ 0.17
CNTN3Q9P232 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CNTN3Q9P232 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms