Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 TREX1-203ENST00000456089 629 ntTSL 3 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 AL008638.4-201ENST00000624792 1315 ntBASIC13.61□□□□□ -0.23
CHD8Q9HCK8 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.61□□□□□ -0.23
CHD8Q9HCK8 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 POLR2LP1-206ENST00000444785 187 ntBASIC13.61□□□□□ -0.23
CHD8Q9HCK8 RN7SL672P-201ENST00000474091 317 ntBASIC13.61□□□□□ -0.23
CHD8Q9HCK8 KRT8P1-201ENST00000557533 1207 ntBASIC13.61□□□□□ -0.23
CHD8Q9HCK8 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
CHD8Q9HCK8 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AP002353.1-201ENST00000528257 1599 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC106782.5-201ENST00000616011 337 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC010531.8-201ENST00000623341 685 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC127383.1-201ENST00000444697 1800 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC009090.5-201ENST00000624886 2285 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 MIR611-201ENST00000384869 67 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 KRT18P44-201ENST00000416086 1285 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 NRADDP-201ENST00000437305 691 ntBASIC13.6□□□□□ -0.23
CHD8Q9HCK8 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.6□□□□□ -0.23
CHD8Q9HCK8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHD8Q9HCK8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHD8Q9HCK8 CICP11-201ENST00000434745 2827 ntBASIC13.59□□□□□ -0.23
CHD8Q9HCK8 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHD8Q9HCK8 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHD8Q9HCK8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHD8Q9HCK8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC13.59□□□□□ -0.23
CHD8Q9HCK8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 470 ms