Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 AC100757.3-201ENST00000622361 1406 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 CNN2P2-201ENST00000443536 909 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 CNN2P3-201ENST00000450201 906 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 AL136317.3-201ENST00000618497 906 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 AL158212.4-201ENST00000624062 1286 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 AL645728.2-202ENST00000641679 227 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 HSPA7-201ENST00000445535 1927 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.15■□□□□ 0.34
ERCC4Q92889 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 AC087499.5-201ENST00000452760 1342 ntBASIC17.15■□□□□ 0.34
ERCC4Q92889 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
ERCC4Q92889 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ERCC4Q92889 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC17.15■□□□□ 0.34
ERCC4Q92889 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
ERCC4Q92889 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
ERCC4Q92889 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.14■□□□□ 0.33
ERCC4Q92889 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.14■□□□□ 0.33
ERCC4Q92889 AC107890.1-201ENST00000422478 521 ntBASIC17.14■□□□□ 0.33
ERCC4Q92889 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.14■□□□□ 0.33
ERCC4Q92889 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.14■□□□□ 0.33
ERCC4Q92889 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.14■□□□□ 0.33
ERCC4Q92889 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.14■□□□□ 0.33
ERCC4Q92889 AC000095.1-201ENST00000603208 874 ntBASIC17.14■□□□□ 0.33
ERCC4Q92889 AC004790.1-201ENST00000612686 536 ntBASIC17.14■□□□□ 0.33
ERCC4Q92889 AL590560.3-201ENST00000623350 461 ntBASIC17.14■□□□□ 0.33
ERCC4Q92889 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
ERCC4Q92889 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC17.14■□□□□ 0.33
ERCC4Q92889 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 AL360270.3-201ENST00000609118 1348 ntBASIC17.14■□□□□ 0.33
ERCC4Q92889 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
ERCC4Q92889 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.14■□□□□ 0.33
ERCC4Q92889 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ERCC4Q92889 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.13■□□□□ 0.33
ERCC4Q92889 ST20-AS1-201ENST00000560255 4223 ntBASIC17.13■□□□□ 0.33
ERCC4Q92889 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ERCC4Q92889 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms