Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC087499.6-201ENST00000411576 835 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 SPDYE17-201ENST00000412399 783 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 GNAQP1-201ENST00000444815 1067 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.23■□□□□ 0.03
PTPN4P29074 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.23■□□□□ 0.03
PTPN4P29074 AC044860.1-202ENST00000559481 777 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 AL033527.5-202ENST00000641632 1098 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
PTPN4P29074 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.23■□□□□ 0.03
PTPN4P29074 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PTPN4P29074 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 AC011474.4-201ENST00000623523 2076 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PTPN4P29074 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTPN4P29074 AC126335.2-201ENST00000623362 4637 ntBASIC15.23■□□□□ 0.03
PTPN4P29074 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
PTPN4P29074 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
PTPN4P29074 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PTPN4P29074 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 AC098614.1-201ENST00000368528 745 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.22■□□□□ 0.03
PTPN4P29074 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 AL139010.1-201ENST00000454878 894 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 DOC2GP-202ENST00000514950 1163 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.22■□□□□ 0.03
PTPN4P29074 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
PTPN4P29074 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.22■□□□□ 0.03
PTPN4P29074 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 TCAF1P1-201ENST00000414990 2232 ntBASIC15.22■□□□□ 0.03
PTPN4P29074 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTPN4P29074 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
PTPN4P29074 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN4P29074 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC15.21■□□□□ 0.03
PTPN4P29074 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PTPN4P29074 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN4P29074 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PTPN4P29074 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms