Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.15■□□□□ 0.66
RXRBP28702 OR6D1P-202ENST00000641007 5290 ntBASIC19.15■□□□□ 0.66
RXRBP28702 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC19.15■□□□□ 0.66
RXRBP28702 AC025594.1-201ENST00000469533 543 ntBASIC19.15■□□□□ 0.66
RXRBP28702 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC19.15■□□□□ 0.66
RXRBP28702 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.15■□□□□ 0.66
RXRBP28702 AC087203.1-201ENST00000532111 1181 ntBASIC19.15■□□□□ 0.66
RXRBP28702 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC19.15■□□□□ 0.66
RXRBP28702 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC19.15■□□□□ 0.66
RXRBP28702 PRMT1P1-201ENST00000604252 1009 ntBASIC19.15■□□□□ 0.66
RXRBP28702 AC021321.1-201ENST00000607397 1113 ntBASIC19.15■□□□□ 0.66
RXRBP28702 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC19.15■□□□□ 0.66
RXRBP28702 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RXRBP28702 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
RXRBP28702 AC124067.4-201ENST00000519691 2379 ntBASIC19.15■□□□□ 0.66
RXRBP28702 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC19.15■□□□□ 0.66
RXRBP28702 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RXRBP28702 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.15■□□□□ 0.66
RXRBP28702 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RXRBP28702 SLC9A7P1-202ENST00000556476 2239 ntBASIC19.15■□□□□ 0.66
RXRBP28702 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RXRBP28702 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RXRBP28702 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RXRBP28702 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC19.14■□□□□ 0.66
RXRBP28702 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RXRBP28702 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RXRBP28702 SALL4P5-201ENST00000419001 1760 ntBASIC19.14■□□□□ 0.66
RXRBP28702 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC19.14■□□□□ 0.65
RXRBP28702 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RXRBP28702 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC19.14■□□□□ 0.65
RXRBP28702 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC19.14■□□□□ 0.65
RXRBP28702 AC025186.1-201ENST00000478174 870 ntBASIC19.14■□□□□ 0.65
RXRBP28702 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC19.14■□□□□ 0.65
RXRBP28702 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC19.14■□□□□ 0.65
RXRBP28702 BMF-206ENST00000558774 671 ntTSL 3 BASIC19.14■□□□□ 0.65
RXRBP28702 NT5C-204ENST00000578337 582 ntTSL 2 BASIC19.14■□□□□ 0.65
RXRBP28702 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC19.14■□□□□ 0.65
RXRBP28702 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC19.14■□□□□ 0.65
RXRBP28702 AC245369.7-201ENST00000631386 350 ntBASIC19.14■□□□□ 0.65
RXRBP28702 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.14■□□□□ 0.65
RXRBP28702 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC19.14■□□□□ 0.65
RXRBP28702 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.14■□□□□ 0.65
RXRBP28702 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RXRBP28702 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
RXRBP28702 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
RXRBP28702 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC19.13■□□□□ 0.65
RXRBP28702 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.13■□□□□ 0.65
RXRBP28702 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC19.13■□□□□ 0.65
RXRBP28702 AC092903.1-201ENST00000466506 262 ntBASIC19.13■□□□□ 0.65
RXRBP28702 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 CES1P2-201ENST00000566467 1242 ntBASIC19.13■□□□□ 0.65
RXRBP28702 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RXRBP28702 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 AL133467.4-201ENST00000602953 725 ntBASIC19.13■□□□□ 0.65
RXRBP28702 MSANTD2P1-201ENST00000445341 1368 ntBASIC19.13■□□□□ 0.65
RXRBP28702 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 AP002353.1-201ENST00000528257 1599 ntBASIC19.13■□□□□ 0.65
RXRBP28702 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.13■□□□□ 0.65
RXRBP28702 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 ILF3-AS1-201ENST00000591501 1983 ntBASIC19.13■□□□□ 0.65
RXRBP28702 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.13■□□□□ 0.65
RXRBP28702 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RXRBP28702 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RXRBP28702 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RXRBP28702 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RXRBP28702 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC19.12■□□□□ 0.65
RXRBP28702 NOC2LP2-201ENST00000407594 1944 ntBASIC19.12■□□□□ 0.65
RXRBP28702 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RXRBP28702 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms