Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
USF1P22415 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.83□□□□□ -0.35
USF1P22415 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
USF1P22415 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
USF1P22415 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
USF1P22415 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 CICP13-201ENST00000422015 2789 ntBASIC12.83□□□□□ -0.36
USF1P22415 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
USF1P22415 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 ACTBP8-201ENST00000403258 1108 ntBASIC12.83□□□□□ -0.36
USF1P22415 KLF2P2-201ENST00000416807 1039 ntBASIC12.83□□□□□ -0.36
USF1P22415 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 AC007969.1-201ENST00000433675 447 ntBASIC12.83□□□□□ -0.36
USF1P22415 MTX1P1-201ENST00000440904 838 ntBASIC12.83□□□□□ -0.36
USF1P22415 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.83□□□□□ -0.36
USF1P22415 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.83□□□□□ -0.36
USF1P22415 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.83□□□□□ -0.36
USF1P22415 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC12.83□□□□□ -0.36
USF1P22415 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC12.83□□□□□ -0.36
USF1P22415 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 RN7SL48P-201ENST00000579283 293 ntBASIC12.83□□□□□ -0.36
USF1P22415 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.83□□□□□ -0.36
USF1P22415 EEF1DP1-201ENST00000585891 896 ntBASIC12.83□□□□□ -0.36
USF1P22415 KLK3-211ENST00000597483 810 ntTSL 2 BASIC12.83□□□□□ -0.36
USF1P22415 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 AC087386.2-201ENST00000623212 4637 ntBASIC12.83□□□□□ -0.36
USF1P22415 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
USF1P22415 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.83□□□□□ -0.36
USF1P22415 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.36
USF1P22415 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
USF1P22415 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
USF1P22415 AL354989.2-201ENST00000435838 1540 ntBASIC12.83□□□□□ -0.36
USF1P22415 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
USF1P22415 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
USF1P22415 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 AL591846.1-201ENST00000451736 433 ntBASIC12.82□□□□□ -0.36
USF1P22415 AL590640.2-201ENST00000457038 527 ntBASIC12.82□□□□□ -0.36
USF1P22415 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.82□□□□□ -0.36
USF1P22415 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC12.82□□□□□ -0.36
USF1P22415 ZNF767P-206ENST00000513792 565 ntBASIC12.82□□□□□ -0.36
USF1P22415 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
USF1P22415 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.82□□□□□ -0.36
USF1P22415 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
USF1P22415 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC12.82□□□□□ -0.36
USF1P22415 AL008638.5-201ENST00000623814 1298 ntBASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms