Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 BANF1P3-201ENST00000412556 261 ntBASIC15.77■□□□□ 0.12
RB1P06400 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC15.77■□□□□ 0.12
RB1P06400 XBP1P1-201ENST00000436573 652 ntBASIC15.77■□□□□ 0.12
RB1P06400 DUTP3-201ENST00000450025 415 ntBASIC15.77■□□□□ 0.12
RB1P06400 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.77■□□□□ 0.12
RB1P06400 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC15.77■□□□□ 0.12
RB1P06400 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.77■□□□□ 0.12
RB1P06400 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.77■□□□□ 0.12
RB1P06400 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.77■□□□□ 0.12
RB1P06400 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.77■□□□□ 0.12
RB1P06400 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC15.77■□□□□ 0.12
RB1P06400 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC15.77■□□□□ 0.12
RB1P06400 SIGLEC18P-201ENST00000602271 909 ntBASIC15.77■□□□□ 0.12
RB1P06400 AC007881.3-201ENST00000608897 607 ntBASIC15.77■□□□□ 0.12
RB1P06400 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
RB1P06400 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.77■□□□□ 0.12
RB1P06400 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RB1P06400 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.77■□□□□ 0.12
RB1P06400 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RB1P06400 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
RB1P06400 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RB1P06400 AL391005.1-201ENST00000623953 2435 ntBASIC15.77■□□□□ 0.11
RB1P06400 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RB1P06400 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.77■□□□□ 0.11
RB1P06400 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RB1P06400 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
RB1P06400 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RB1P06400 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
RB1P06400 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SOD2-202ENST00000367054 815 ntTSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 MIR557-201ENST00000385239 98 ntBASIC15.76■□□□□ 0.11
RB1P06400 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC15.76■□□□□ 0.11
RB1P06400 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 AL627422.1-201ENST00000434104 580 ntBASIC15.76■□□□□ 0.11
RB1P06400 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.76■□□□□ 0.11
RB1P06400 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
RB1P06400 AC092299.1-201ENST00000632679 757 ntBASIC15.76■□□□□ 0.11
RB1P06400 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 ZBED1P1-201ENST00000502364 1930 ntBASIC15.76■□□□□ 0.11
RB1P06400 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
RB1P06400 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RB1P06400 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RB1P06400 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.75■□□□□ 0.11
RB1P06400 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.75■□□□□ 0.11
RB1P06400 CYP4F23P-201ENST00000593402 1579 ntBASIC15.75■□□□□ 0.11
RB1P06400 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.75■□□□□ 0.11
RB1P06400 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.75■□□□□ 0.11
RB1P06400 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
RB1P06400 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.75■□□□□ 0.11
RB1P06400 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RB1P06400 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC15.75■□□□□ 0.11
RB1P06400 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
RB1P06400 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms