Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.7□□□□□ -0.38
CD74P04233 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 WARS-203ENST00000358655 2466 ntTSL 2 BASIC12.7□□□□□ -0.38
CD74P04233 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.7□□□□□ -0.38
CD74P04233 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CD74P04233 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CD74P04233 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.7□□□□□ -0.38
CD74P04233 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 CICP16-201ENST00000502609 2813 ntBASIC12.7□□□□□ -0.38
CD74P04233 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.7□□□□□ -0.38
CD74P04233 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.7□□□□□ -0.38
CD74P04233 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CD74P04233 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.7□□□□□ -0.38
CD74P04233 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CD74P04233 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 Z82170.1-201ENST00000625081 3192 ntBASIC12.69□□□□□ -0.38
CD74P04233 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CD74P04233 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 MRPL3P1-201ENST00000400109 1033 ntBASIC12.69□□□□□ -0.38
CD74P04233 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 FAM58CP-201ENST00000435741 640 ntBASIC12.69□□□□□ -0.38
CD74P04233 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 FAAHP1-202ENST00000446499 1238 ntBASIC12.69□□□□□ -0.38
CD74P04233 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.69□□□□□ -0.38
CD74P04233 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.69□□□□□ -0.38
CD74P04233 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC12.69□□□□□ -0.38
CD74P04233 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.69□□□□□ -0.38
CD74P04233 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC12.69□□□□□ -0.38
CD74P04233 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 RN7SL510P-201ENST00000581311 263 ntBASIC12.69□□□□□ -0.38
CD74P04233 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 AC018529.1-201ENST00000613063 361 ntBASIC12.69□□□□□ -0.38
CD74P04233 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 AC087386.2-201ENST00000623212 4637 ntBASIC12.69□□□□□ -0.38
CD74P04233 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 NUTM2HP-201ENST00000442076 2498 ntBASIC12.69□□□□□ -0.38
CD74P04233 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC12.69□□□□□ -0.38
CD74P04233 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.69□□□□□ -0.38
CD74P04233 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 RN7SL832P-201ENST00000607781 1756 ntBASIC12.69□□□□□ -0.38
CD74P04233 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CD74P04233 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CD74P04233 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CD74P04233 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.68□□□□□ -0.38
CD74P04233 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CD74P04233 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CD74P04233 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CD74P04233 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CD74P04233 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms