Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC21.39■■□□□ 1.01
MSH5O43196 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
MSH5O43196 AC009407.1-201ENST00000568958 598 ntBASIC21.39■■□□□ 1.01
MSH5O43196 BNIP3P20-201ENST00000604827 578 ntBASIC21.39■■□□□ 1.01
MSH5O43196 AC084346.2-201ENST00000607097 949 ntBASIC21.39■■□□□ 1.01
MSH5O43196 AC010608.3-201ENST00000625048 527 ntBASIC21.39■■□□□ 1.01
MSH5O43196 HPVC1-201ENST00000629899 1198 ntBASIC21.39■■□□□ 1.01
MSH5O43196 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH5O43196 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
MSH5O43196 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH5O43196 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
MSH5O43196 VN1R51P-201ENST00000411675 945 ntBASIC21.38■■□□□ 1.01
MSH5O43196 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH5O43196 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC21.38■■□□□ 1.01
MSH5O43196 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
MSH5O43196 MTND6P24-201ENST00000440466 518 ntBASIC21.38■■□□□ 1.01
MSH5O43196 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 UBE2V1P7-201ENST00000446395 340 ntBASIC21.38■■□□□ 1.01
MSH5O43196 AL389885.1-201ENST00000447227 384 ntTSL 3 BASIC21.38■■□□□ 1.01
MSH5O43196 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH5O43196 NOP2-211ENST00000540228 668 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH5O43196 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 RAB43P1-201ENST00000561790 589 ntBASIC21.38■■□□□ 1.01
MSH5O43196 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC21.38■■□□□ 1.01
MSH5O43196 AC009075.2-201ENST00000568483 301 ntBASIC21.38■■□□□ 1.01
MSH5O43196 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC21.38■■□□□ 1.01
MSH5O43196 COA6-204ENST00000619305 697 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 AC013437.2-201ENST00000639587 677 ntBASIC21.38■■□□□ 1.01
MSH5O43196 FBXO9-203ENST00000370939 1580 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH5O43196 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 TPO-203ENST00000346956 2923 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH5O43196 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH5O43196 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 AC026748.1-201ENST00000624349 3251 ntBASIC21.37■■□□□ 1.01
MSH5O43196 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
MSH5O43196 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 HIGD1AP15-201ENST00000416198 280 ntBASIC21.37■■□□□ 1.01
MSH5O43196 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 HCG4-201ENST00000418983 998 ntBASIC21.37■■□□□ 1.01
MSH5O43196 AC112492.5-201ENST00000421897 457 ntBASIC21.37■■□□□ 1.01
MSH5O43196 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH5O43196 IFNNP1-201ENST00000429219 553 ntBASIC21.37■■□□□ 1.01
MSH5O43196 AC009477.1-201ENST00000452936 217 ntBASIC21.37■■□□□ 1.01
MSH5O43196 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH5O43196 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC21.37■■□□□ 1.01
MSH5O43196 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.37■■□□□ 1.01
MSH5O43196 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH5O43196 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH5O43196 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 CR383656.14-201ENST00000551951 406 ntBASIC21.37■■□□□ 1.01
MSH5O43196 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC21.37■■□□□ 1.01
MSH5O43196 AC091965.4-201ENST00000607691 587 ntBASIC21.37■■□□□ 1.01
MSH5O43196 RNA5-8SN1-201ENST00000610460 153 ntBASIC21.37■■□□□ 1.01
MSH5O43196 RNA5-8SN5-202ENST00000612463 153 ntBASIC21.37■■□□□ 1.01
MSH5O43196 RNA5-8SN4-201ENST00000613359 153 ntBASIC21.37■■□□□ 1.01
MSH5O43196 AC116165.2-201ENST00000616705 206 ntBASIC21.37■■□□□ 1.01
MSH5O43196 RNA5-8SN5-201ENST00000619471 153 ntBASIC21.37■■□□□ 1.01
MSH5O43196 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 AL592494.2-201ENST00000425455 1548 ntBASIC21.37■■□□□ 1.01
MSH5O43196 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
MSH5O43196 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms