Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 MIR661-201ENST00000384842 89 ntBASIC12.24□□□□□ -0.45
FOXA2Q9Y261 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 AL353779.1-201ENST00000434793 351 ntBASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 HSPA7-201ENST00000445535 1927 ntBASIC12.23□□□□□ -0.45
FOXA2Q9Y261 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC015802.1-201ENST00000588104 1449 ntBASIC12.23□□□□□ -0.45
FOXA2Q9Y261 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 RPL13AP25-201ENST00000484130 612 ntBASIC12.23□□□□□ -0.45
FOXA2Q9Y261 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC093726.1-201ENST00000608064 963 ntBASIC12.23□□□□□ -0.45
FOXA2Q9Y261 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC004790.1-201ENST00000612686 536 ntBASIC12.23□□□□□ -0.45
FOXA2Q9Y261 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.23□□□□□ -0.45
FOXA2Q9Y261 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA2Q9Y261 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms