Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC232323.1-201ENST00000540724 2099 ntBASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 INE1-201ENST00000456273 945 ntBASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 INTS4P1-203ENST00000641008 3683 ntBASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 AC007389.4-201ENST00000454674 793 ntBASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
AP4E1Q9UPM8 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.64■□□□□ 0.1
AP4E1Q9UPM8 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.64■□□□□ 0.09
AP4E1Q9UPM8 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms