Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC011840.2-201ENST00000563063 1520 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 HMGN1P19-201ENST00000436976 333 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 MESTP3-201ENST00000503460 968 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC010319.3-201ENST00000597028 470 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC138696.2-201ENST00000607376 223 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AL928921.2-201ENST00000641325 2442 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC134312.5-201ENST00000568031 1313 ntBASIC16.1■□□□□ 0.17
SIX2Q9NPC8 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.1■□□□□ 0.17
SIX2Q9NPC8 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 AC106760.1-201ENST00000508690 800 ntBASIC16.09■□□□□ 0.17
SIX2Q9NPC8 GCOM2-201ENST00000509133 1104 ntBASIC16.09■□□□□ 0.17
SIX2Q9NPC8 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 GNRHR2-203ENST00000581100 1187 ntBASIC16.09■□□□□ 0.17
SIX2Q9NPC8 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 AC092135.3-201ENST00000624151 1846 ntBASIC16.09■□□□□ 0.17
SIX2Q9NPC8 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SIX2Q9NPC8 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SIX2Q9NPC8 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.08■□□□□ 0.17
SIX2Q9NPC8 AC020910.5-201ENST00000623668 1865 ntBASIC16.08■□□□□ 0.17
SIX2Q9NPC8 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 AC041040.2-201ENST00000622926 2899 ntBASIC16.08■□□□□ 0.16
SIX2Q9NPC8 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SIX2Q9NPC8 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms