Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 DPY19L2P5-201ENST00000456300 331 ntBASIC19.42■□□□□ 0.7
USP54Q70EL1 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC19.42■□□□□ 0.7
USP54Q70EL1 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
USP54Q70EL1 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 AC021016.3-201ENST00000608367 477 ntBASIC19.42■□□□□ 0.7
USP54Q70EL1 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.42■□□□□ 0.7
USP54Q70EL1 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP54Q70EL1 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP54Q70EL1 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC19.41■□□□□ 0.7
USP54Q70EL1 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
USP54Q70EL1 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP54Q70EL1 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP54Q70EL1 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC19.41■□□□□ 0.7
USP54Q70EL1 LINC00265-2P-201ENST00000413372 782 ntBASIC19.41■□□□□ 0.7
USP54Q70EL1 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.41■□□□□ 0.7
USP54Q70EL1 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC19.41■□□□□ 0.7
USP54Q70EL1 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
USP54Q70EL1 SCARNA12-201ENST00000459155 270 ntBASIC19.41■□□□□ 0.7
USP54Q70EL1 RNA5SP417-201ENST00000516459 108 ntBASIC19.41■□□□□ 0.7
USP54Q70EL1 API5-208ENST00000531273 1868 ntTSL 2 BASIC19.41■□□□□ 0.7
USP54Q70EL1 CR383656.3-201ENST00000551315 183 ntBASIC19.41■□□□□ 0.7
USP54Q70EL1 AC140658.4-201ENST00000561990 352 ntBASIC19.41■□□□□ 0.7
USP54Q70EL1 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC19.41■□□□□ 0.7
USP54Q70EL1 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP54Q70EL1 AC067931.2-201ENST00000623655 2003 ntBASIC19.41■□□□□ 0.7
USP54Q70EL1 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.41■□□□□ 0.7
USP54Q70EL1 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP54Q70EL1 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP54Q70EL1 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.41■□□□□ 0.7
USP54Q70EL1 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
USP54Q70EL1 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AL592076.1-201ENST00000424448 303 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 AC092638.2-201ENST00000441105 947 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC19.4■□□□□ 0.7
USP54Q70EL1 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 RPL18AP8-201ENST00000486071 528 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AC022447.6-201ENST00000515522 438 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AC002044.2-201ENST00000624910 970 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
USP54Q70EL1 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC19.4■□□□□ 0.7
USP54Q70EL1 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP54Q70EL1 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC19.4■□□□□ 0.7
USP54Q70EL1 MIR6074-201ENST00000612054 107 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 AC127024.7-201ENST00000625101 200 ntBASIC19.4■□□□□ 0.7
USP54Q70EL1 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP54Q70EL1 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
USP54Q70EL1 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
USP54Q70EL1 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.39■□□□□ 0.7
USP54Q70EL1 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP54Q70EL1 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP54Q70EL1 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP54Q70EL1 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.39■□□□□ 0.69
USP54Q70EL1 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
USP54Q70EL1 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
USP54Q70EL1 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 LINC00634-202ENST00000505157 222 ntBASIC19.39■□□□□ 0.69
USP54Q70EL1 AC005586.2-201ENST00000563946 837 ntBASIC19.39■□□□□ 0.69
USP54Q70EL1 NDUFB10P1-201ENST00000567319 521 ntBASIC19.39■□□□□ 0.69
USP54Q70EL1 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
USP54Q70EL1 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.39■□□□□ 0.69
USP54Q70EL1 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP54Q70EL1 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms