Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.54□□□□□ -0.24
SCN1BQ07699 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 AC243562.2-201ENST00000561247 970 ntBASIC13.54□□□□□ -0.24
SCN1BQ07699 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.54□□□□□ -0.24
SCN1BQ07699 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.54□□□□□ -0.24
SCN1BQ07699 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SCN1BQ07699 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.54□□□□□ -0.24
SCN1BQ07699 AC073389.1-201ENST00000595595 795 ntBASIC13.54□□□□□ -0.24
SCN1BQ07699 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SCN1BQ07699 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
SCN1BQ07699 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SCN1BQ07699 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SCN1BQ07699 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SCN1BQ07699 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.54□□□□□ -0.24
SCN1BQ07699 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.54□□□□□ -0.24
SCN1BQ07699 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
SCN1BQ07699 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SCN1BQ07699 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SCN1BQ07699 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SCN1BQ07699 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.54□□□□□ -0.24
SCN1BQ07699 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.54□□□□□ -0.24
SCN1BQ07699 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SCN1BQ07699 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 NUTM2HP-201ENST00000442076 2498 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SCN1BQ07699 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SCN1BQ07699 RPL5P21-201ENST00000404620 815 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.53□□□□□ -0.24
SCN1BQ07699 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC079140.1-201ENST00000508039 487 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.53□□□□□ -0.24
SCN1BQ07699 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC243562.1-201ENST00000560672 389 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.53□□□□□ -0.24
SCN1BQ07699 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC011467.4-201ENST00000594891 528 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
SCN1BQ07699 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 FOXO1B-201ENST00000504678 1527 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.53□□□□□ -0.24
SCN1BQ07699 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.53□□□□□ -0.24
SCN1BQ07699 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SCN1BQ07699 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.53□□□□□ -0.24
SCN1BQ07699 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SCN1BQ07699 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.52□□□□□ -0.24
SCN1BQ07699 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
SCN1BQ07699 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.52□□□□□ -0.24
SCN1BQ07699 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
SCN1BQ07699 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SCN1BQ07699 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms