Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC12.97□□□□□ -0.33
ABCA4P78363 HLA-C-210ENST00000640219 976 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 REXO1L2P-201ENST00000425429 2069 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 AL596276.2-201ENST00000447525 331 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 AL133466.1-201ENST00000447582 150 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 RNMTL1P1-201ENST00000454103 560 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 RN7SL181P-201ENST00000462921 277 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 IMP3P2-201ENST00000489760 475 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC12.97□□□□□ -0.33
ABCA4P78363 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 AP001002.3-201ENST00000623482 206 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 CDK7-214ENST00000626796 358 ntTSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 AP000593.2-201ENST00000542775 1433 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
ABCA4P78363 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
ABCA4P78363 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
ABCA4P78363 AC011840.2-201ENST00000563063 1520 ntBASIC12.97□□□□□ -0.33
ABCA4P78363 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.96□□□□□ -0.33
ABCA4P78363 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC12.96□□□□□ -0.33
ABCA4P78363 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
ABCA4P78363 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.96□□□□□ -0.33
ABCA4P78363 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 RN7SL555P-201ENST00000584742 339 ntBASIC12.96□□□□□ -0.33
ABCA4P78363 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
ABCA4P78363 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
ABCA4P78363 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA4P78363 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.96□□□□□ -0.34
ABCA4P78363 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC12.96□□□□□ -0.34
ABCA4P78363 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.96□□□□□ -0.34
ABCA4P78363 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.96□□□□□ -0.34
ABCA4P78363 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.34
ABCA4P78363 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.96□□□□□ -0.34
ABCA4P78363 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.96□□□□□ -0.34
ABCA4P78363 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms