Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.67■□□□□ 0.74
RIPK4P57078 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC19.67■□□□□ 0.74
RIPK4P57078 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.67■□□□□ 0.74
RIPK4P57078 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
RIPK4P57078 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 MIR1908-201ENST00000410394 80 ntBASIC19.67■□□□□ 0.74
RIPK4P57078 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
RIPK4P57078 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.67■□□□□ 0.74
RIPK4P57078 CHMP1AP1-201ENST00000445563 662 ntBASIC19.67■□□□□ 0.74
RIPK4P57078 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
RIPK4P57078 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.67■□□□□ 0.74
RIPK4P57078 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.67■□□□□ 0.74
RIPK4P57078 RN7SL560P-201ENST00000577943 264 ntBASIC19.67■□□□□ 0.74
RIPK4P57078 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 TUBB1P2-201ENST00000422712 1306 ntBASIC19.67■□□□□ 0.74
RIPK4P57078 TUBB1P1-201ENST00000503144 1300 ntBASIC19.67■□□□□ 0.74
RIPK4P57078 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.67■□□□□ 0.74
RIPK4P57078 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.67■□□□□ 0.74
RIPK4P57078 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 LINC01101-201ENST00000622953 1884 ntBASIC19.67■□□□□ 0.74
RIPK4P57078 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RIPK4P57078 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RIPK4P57078 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 FER1L4-210ENST00000615531 5998 ntBASIC19.66■□□□□ 0.74
RIPK4P57078 AL023775.1-201ENST00000454907 1746 ntBASIC19.66■□□□□ 0.74
RIPK4P57078 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 TNRC18P2-201ENST00000417666 2714 ntBASIC19.66■□□□□ 0.74
RIPK4P57078 GPI-205ENST00000586425 1799 ntTSL 5 BASIC19.66■□□□□ 0.74
RIPK4P57078 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.66■□□□□ 0.74
RIPK4P57078 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.66■□□□□ 0.74
RIPK4P57078 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.66■□□□□ 0.74
RIPK4P57078 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.66■□□□□ 0.74
RIPK4P57078 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.66■□□□□ 0.74
RIPK4P57078 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.66■□□□□ 0.74
RIPK4P57078 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.66■□□□□ 0.74
RIPK4P57078 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
RIPK4P57078 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK4P57078 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RIPK4P57078 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
RIPK4P57078 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
RIPK4P57078 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 TLE1P1-201ENST00000422965 589 ntBASIC19.65■□□□□ 0.74
RIPK4P57078 AL355994.2-201ENST00000447882 704 ntBASIC19.65■□□□□ 0.74
RIPK4P57078 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.65■□□□□ 0.74
RIPK4P57078 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 ZACNP1-201ENST00000612259 710 ntBASIC19.65■□□□□ 0.74
RIPK4P57078 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK4P57078 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.65■□□□□ 0.74
RIPK4P57078 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.65■□□□□ 0.74
RIPK4P57078 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms