Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH6P52701 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC20.45■□□□□ 0.86
MSH6P52701 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
MSH6P52701 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC20.45■□□□□ 0.86
MSH6P52701 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
MSH6P52701 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
MSH6P52701 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
MSH6P52701 RN7SL357P-201ENST00000581065 298 ntBASIC20.45■□□□□ 0.86
MSH6P52701 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
MSH6P52701 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC20.45■□□□□ 0.86
MSH6P52701 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC20.45■□□□□ 0.86
MSH6P52701 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
MSH6P52701 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH6P52701 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH6P52701 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC20.44■□□□□ 0.86
MSH6P52701 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 TMBIM7P-202ENST00000641474 1516 ntBASIC20.44■□□□□ 0.86
MSH6P52701 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 AL672207.1-201ENST00000328462 1570 ntBASIC20.44■□□□□ 0.86
MSH6P52701 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 ACE-204ENST00000428043 5120 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 FAS-202ENST00000352159 1722 ntTSL 5 BASIC20.44■□□□□ 0.86
MSH6P52701 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC20.44■□□□□ 0.86
MSH6P52701 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 PTPA-215ENST00000432124 567 ntTSL 4 BASIC20.44■□□□□ 0.86
MSH6P52701 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH6P52701 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC20.44■□□□□ 0.86
MSH6P52701 RN7SL530P-201ENST00000485097 298 ntBASIC20.44■□□□□ 0.86
MSH6P52701 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH6P52701 GCOM2-201ENST00000509133 1104 ntBASIC20.44■□□□□ 0.86
MSH6P52701 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
MSH6P52701 AP005264.6-204ENST00000588436 719 ntBASIC20.44■□□□□ 0.86
MSH6P52701 AC021305.1-201ENST00000520656 1514 ntBASIC20.44■□□□□ 0.86
MSH6P52701 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH6P52701 CTBP2P8-201ENST00000422584 1330 ntBASIC20.43■□□□□ 0.86
MSH6P52701 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
MSH6P52701 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH6P52701 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 NME4-203ENST00000397722 1232 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH6P52701 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC20.43■□□□□ 0.86
MSH6P52701 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC20.43■□□□□ 0.86
MSH6P52701 AC068867.1-201ENST00000559855 150 ntBASIC20.43■□□□□ 0.86
MSH6P52701 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 FTLP5-201ENST00000586853 534 ntBASIC20.43■□□□□ 0.86
MSH6P52701 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC20.43■□□□□ 0.86
MSH6P52701 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
MSH6P52701 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC20.43■□□□□ 0.86
MSH6P52701 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH6P52701 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH6P52701 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH6P52701 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
MSH6P52701 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
MSH6P52701 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms