Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 OR2A1-AS1-210ENST00000496968 531 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 AC106047.2-201ENST00000511723 743 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC19.24■□□□□ 0.67
COL18A1P39060 KLF17P1-201ENST00000547105 1126 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 THY1-209ENST00000580275 578 ntTSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC19.24■□□□□ 0.67
COL18A1P39060 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.24■□□□□ 0.67
COL18A1P39060 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 AC084018.2-201ENST00000613093 2607 ntBASIC19.23■□□□□ 0.67
COL18A1P39060 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.23■□□□□ 0.67
COL18A1P39060 AL672207.1-201ENST00000328462 1570 ntBASIC19.23■□□□□ 0.67
COL18A1P39060 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC19.23■□□□□ 0.67
COL18A1P39060 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC19.23■□□□□ 0.67
COL18A1P39060 OR5BD1P-201ENST00000532527 817 ntBASIC19.23■□□□□ 0.67
COL18A1P39060 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL18A1P39060 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.23■□□□□ 0.67
COL18A1P39060 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL18A1P39060 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 KRT17P4-201ENST00000429445 819 ntBASIC19.22■□□□□ 0.67
COL18A1P39060 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC19.22■□□□□ 0.67
COL18A1P39060 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC19.22■□□□□ 0.67
COL18A1P39060 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC19.22■□□□□ 0.67
COL18A1P39060 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
COL18A1P39060 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
COL18A1P39060 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.22■□□□□ 0.67
COL18A1P39060 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.22■□□□□ 0.67
COL18A1P39060 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC19.22■□□□□ 0.67
COL18A1P39060 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 FTX-216ENST00000638985 1367 ntTSL 5 BASIC19.22■□□□□ 0.67
COL18A1P39060 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL18A1P39060 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC19.21■□□□□ 0.67
COL18A1P39060 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL18A1P39060 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.21■□□□□ 0.67
COL18A1P39060 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
COL18A1P39060 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL18A1P39060 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL18A1P39060 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.21■□□□□ 0.67
COL18A1P39060 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC19.21■□□□□ 0.67
COL18A1P39060 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL18A1P39060 USB1-205ENST00000561743 1135 ntTSL 3 BASIC19.21■□□□□ 0.67
COL18A1P39060 NDUFB10P1-201ENST00000567319 521 ntBASIC19.21■□□□□ 0.67
COL18A1P39060 NT5C-204ENST00000578337 582 ntTSL 2 BASIC19.21■□□□□ 0.67
COL18A1P39060 TRMT112P3-201ENST00000580149 358 ntBASIC19.21■□□□□ 0.67
COL18A1P39060 EIF5AP2-201ENST00000585668 1047 ntBASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms