Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.7■□□□□ 0.58
RFC4P35249 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFC4P35249 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RFC4P35249 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.7■□□□□ 0.58
RFC4P35249 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RFC4P35249 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.7■□□□□ 0.58
RFC4P35249 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
RFC4P35249 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFC4P35249 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFC4P35249 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RFC4P35249 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RFC4P35249 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFC4P35249 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFC4P35249 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.69■□□□□ 0.58
RFC4P35249 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.69■□□□□ 0.58
RFC4P35249 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.69■□□□□ 0.58
RFC4P35249 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.69■□□□□ 0.58
RFC4P35249 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC18.69■□□□□ 0.58
RFC4P35249 TSPY25P-201ENST00000429463 745 ntBASIC18.69■□□□□ 0.58
RFC4P35249 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.69■□□□□ 0.58
RFC4P35249 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.69■□□□□ 0.58
RFC4P35249 AC141586.1-203ENST00000567242 366 ntBASIC18.69■□□□□ 0.58
RFC4P35249 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.69■□□□□ 0.58
RFC4P35249 AC005357.2-202ENST00000590507 1060 ntBASIC18.69■□□□□ 0.58
RFC4P35249 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.69■□□□□ 0.58
RFC4P35249 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.69■□□□□ 0.58
RFC4P35249 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.69■□□□□ 0.58
RFC4P35249 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFC4P35249 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.69■□□□□ 0.58
RFC4P35249 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFC4P35249 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFC4P35249 AC018629.1-201ENST00000623381 1736 ntBASIC18.69■□□□□ 0.58
RFC4P35249 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.68■□□□□ 0.58
RFC4P35249 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 GCOM2-201ENST00000509133 1104 ntBASIC18.68■□□□□ 0.58
RFC4P35249 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 VPS18-202ENST00000558474 873 ntTSL 3 BASIC18.68■□□□□ 0.58
RFC4P35249 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 AC107464.3-201ENST00000609172 737 ntBASIC18.68■□□□□ 0.58
RFC4P35249 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.68■□□□□ 0.58
RFC4P35249 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFC4P35249 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.68■□□□□ 0.58
RFC4P35249 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RFC4P35249 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFC4P35249 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RFC4P35249 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.67■□□□□ 0.58
RFC4P35249 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.67■□□□□ 0.58
RFC4P35249 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.67■□□□□ 0.58
RFC4P35249 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
RFC4P35249 CYP2T1P-202ENST00000641596 2535 ntBASIC18.67■□□□□ 0.58
RFC4P35249 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms