Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 AC092135.3-201ENST00000624151 1846 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 AL136172.1-201ENST00000598590 1394 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A5P29400 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 AL365203.3-201ENST00000609742 2057 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A5P29400 KRT18P46-201ENST00000435568 1279 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 OR5BD1P-201ENST00000532527 817 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC17.55■□□□□ 0.4
COL4A5P29400 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A5P29400 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A5P29400 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A5P29400 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A5P29400 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
COL4A5P29400 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A5P29400 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A5P29400 AC126365.1-201ENST00000578585 1514 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 IGHV1-12-201ENST00000518307 205 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 TREHP1-201ENST00000531328 465 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A5P29400 SIGLEC22P-201ENST00000599104 714 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 DGAT2L7P-201ENST00000602462 744 ntBASIC17.55■□□□□ 0.4
COL4A5P29400 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A5P29400 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A5P29400 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL4A5P29400 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A5P29400 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A5P29400 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A5P29400 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A5P29400 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC17.54■□□□□ 0.4
COL4A5P29400 RPL35P9-201ENST00000446059 350 ntBASIC17.54■□□□□ 0.4
COL4A5P29400 RN7SL494P-201ENST00000461517 304 ntBASIC17.54■□□□□ 0.4
COL4A5P29400 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A5P29400 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A5P29400 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL4A5P29400 USB1-205ENST00000561743 1135 ntTSL 3 BASIC17.54■□□□□ 0.4
COL4A5P29400 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A5P29400 PEBP1P2-201ENST00000603980 558 ntBASIC17.54■□□□□ 0.4
COL4A5P29400 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A5P29400 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A5P29400 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A5P29400 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
COL4A5P29400 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
COL4A5P29400 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 AC011270.2-201ENST00000624293 2550 ntBASIC17.53■□□□□ 0.4
COL4A5P29400 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.53■□□□□ 0.4
COL4A5P29400 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.53■□□□□ 0.4
COL4A5P29400 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.53■□□□□ 0.4
COL4A5P29400 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL4A5P29400 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A5P29400 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL4A5P29400 RN7SL564P-201ENST00000496309 250 ntBASIC17.53■□□□□ 0.4
COL4A5P29400 FAM86B3P-203ENST00000523992 854 ntBASIC17.53■□□□□ 0.4
COL4A5P29400 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms