Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.34□□□□□ -0.11
PTPN6P29350 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
PTPN6P29350 CLK3P2-201ENST00000427566 1453 ntBASIC14.34□□□□□ -0.11
PTPN6P29350 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.34□□□□□ -0.11
PTPN6P29350 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.34□□□□□ -0.11
PTPN6P29350 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 RARRES2P5-201ENST00000564013 466 ntBASIC14.34□□□□□ -0.11
PTPN6P29350 AC027307.3-201ENST00000594262 1100 ntBASIC14.34□□□□□ -0.11
PTPN6P29350 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
PTPN6P29350 AC105233.6-201ENST00000642093 218 ntBASIC14.34□□□□□ -0.11
PTPN6P29350 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.34□□□□□ -0.11
PTPN6P29350 AC018665.1-201ENST00000622927 1362 ntBASIC14.34□□□□□ -0.11
PTPN6P29350 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTPN6P29350 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.34□□□□□ -0.11
PTPN6P29350 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTPN6P29350 AL137783.1-201ENST00000623494 1896 ntBASIC14.33□□□□□ -0.11
PTPN6P29350 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.33□□□□□ -0.11
PTPN6P29350 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTPN6P29350 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PTPN6P29350 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
PTPN6P29350 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.11
PTPN6P29350 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTPN6P29350 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.11
PTPN6P29350 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTPN6P29350 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
PTPN6P29350 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
PTPN6P29350 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.33□□□□□ -0.12
PTPN6P29350 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.33□□□□□ -0.12
PTPN6P29350 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.33□□□□□ -0.12
PTPN6P29350 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.33□□□□□ -0.12
PTPN6P29350 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
PTPN6P29350 RRP7BP-205ENST00000566851 833 ntBASIC14.33□□□□□ -0.12
PTPN6P29350 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 CHCHD2P3-201ENST00000603038 451 ntBASIC14.33□□□□□ -0.12
PTPN6P29350 AC025048.6-201ENST00000634326 1161 ntBASIC14.33□□□□□ -0.12
PTPN6P29350 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.33□□□□□ -0.12
PTPN6P29350 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.33□□□□□ -0.12
PTPN6P29350 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.33□□□□□ -0.12
PTPN6P29350 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
PTPN6P29350 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PTPN6P29350 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PTPN6P29350 DRD5P1-201ENST00000456605 1438 ntBASIC14.32□□□□□ -0.12
PTPN6P29350 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms