Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A3P12111 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.15■□□□□ 0.02
COL6A3P12111 RPL13AP3-202ENST00000494676 1473 ntBASIC15.15■□□□□ 0.02
COL6A3P12111 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL6A3P12111 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL6A3P12111 OR8T1P-201ENST00000421347 918 ntBASIC15.15■□□□□ 0.02
COL6A3P12111 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.15■□□□□ 0.02
COL6A3P12111 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC15.15■□□□□ 0.02
COL6A3P12111 CCNL2P1-201ENST00000512846 969 ntBASIC15.15■□□□□ 0.02
COL6A3P12111 AACSP1-202ENST00000521412 1095 ntBASIC15.15■□□□□ 0.02
COL6A3P12111 MIR1587-201ENST00000583319 53 ntBASIC15.15■□□□□ 0.02
COL6A3P12111 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC15.15■□□□□ 0.02
COL6A3P12111 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL6A3P12111 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.15■□□□□ 0.02
COL6A3P12111 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
COL6A3P12111 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A3P12111 FLJ38576-201ENST00000623820 2459 ntBASIC15.15■□□□□ 0.02
COL6A3P12111 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A3P12111 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A3P12111 U3.41-201ENST00000408711 219 ntBASIC15.14■□□□□ 0.01
COL6A3P12111 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
COL6A3P12111 KRT8P1-201ENST00000557533 1207 ntBASIC15.14■□□□□ 0.01
COL6A3P12111 AL353708.1-201ENST00000567904 1257 ntBASIC15.14■□□□□ 0.01
COL6A3P12111 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A3P12111 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A3P12111 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 HINT1-205ENST00000508488 703 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 NT5C-204ENST00000578337 582 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC15.14■□□□□ 0.01
COL6A3P12111 PAX6-247ENST00000638965 979 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A3P12111 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 AC127383.1-201ENST00000444697 1800 ntBASIC15.14■□□□□ 0.01
COL6A3P12111 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A3P12111 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A3P12111 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC15.14■□□□□ 0.01
COL6A3P12111 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC15.14■□□□□ 0.01
COL6A3P12111 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A3P12111 RN7SL767P-201ENST00000493013 295 ntBASIC15.14■□□□□ 0.01
COL6A3P12111 AC099343.1-201ENST00000513481 609 ntBASIC15.14■□□□□ 0.01
COL6A3P12111 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
COL6A3P12111 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A3P12111 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A3P12111 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A3P12111 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL6A3P12111 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 PPP1R2P10-201ENST00000393023 595 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 PSAT1P2-201ENST00000426107 972 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC15.13■□□□□ 0.01
COL6A3P12111 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A3P12111 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.13■□□□□ 0.01
COL6A3P12111 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
COL6A3P12111 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 AC006504.5-208ENST00000588784 2401 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
COL6A3P12111 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A3P12111 AP000244.1-201ENST00000424582 201 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 AC005722.1-201ENST00000431878 964 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 OR52V1P-201ENST00000515557 898 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 AC132812.1-201ENST00000583145 892 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 AL021707.6-201ENST00000609212 491 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL6A3P12111 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL6A3P12111 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
COL6A3P12111 AP002353.1-201ENST00000528257 1599 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A3P12111 AC067931.2-201ENST00000623655 2003 ntBASIC15.13■□□□□ 0.01
COL6A3P12111 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms