Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 ELK2BP-201ENST00000415014 1224 ntBASIC11.42□□□□□ -0.58
HLA-DQA1P01909 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 FAAHP1-202ENST00000446499 1238 ntBASIC11.42□□□□□ -0.58
HLA-DQA1P01909 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 KRT126P-201ENST00000549467 1181 ntBASIC11.42□□□□□ -0.58
HLA-DQA1P01909 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 TP73-AS1-207ENST00000624167 988 ntBASIC11.42□□□□□ -0.58
HLA-DQA1P01909 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 AMT-221ENST00000538581 2038 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DQA1P01909 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC023794.5-201ENST00000564380 2157 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 GOLGA2P9-201ENST00000596977 1937 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 INIP-202ENST00000374236 874 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC079781.3-201ENST00000449110 356 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 RNPS1P1-201ENST00000507437 918 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MOK-208ENST00000519058 917 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC025062.2-201ENST00000605477 670 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AL031008.1-201ENST00000619963 541 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC068760.1-201ENST00000493579 1953 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 AC073439.1-201ENST00000624121 1774 ntBASIC11.41□□□□□ -0.58
HLA-DQA1P01909 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms