Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 WASH3P-207ENST00000560956 1394 ntBASIC20.58■□□□□ 0.88
NPHP4O75161 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP4O75161 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
NPHP4O75161 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP4O75161 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 AL603832.2-201ENST00000566195 2125 ntBASIC20.57■□□□□ 0.88
NPHP4O75161 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP4O75161 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NPHP4O75161 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP4O75161 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP4O75161 KRT8P2-201ENST00000556193 944 ntBASIC20.57■□□□□ 0.88
NPHP4O75161 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP4O75161 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP4O75161 AL133467.4-201ENST00000602953 725 ntBASIC20.57■□□□□ 0.88
NPHP4O75161 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP4O75161 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC20.57■□□□□ 0.88
NPHP4O75161 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NPHP4O75161 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP4O75161 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.57■□□□□ 0.88
NPHP4O75161 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC20.57■□□□□ 0.88
NPHP4O75161 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPHP4O75161 PRORSD1P-202ENST00000563365 2154 ntBASIC20.57■□□□□ 0.88
NPHP4O75161 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
NPHP4O75161 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP4O75161 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NPHP4O75161 SNX15-201ENST00000352068 771 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP4O75161 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP4O75161 GEMIN8P4-201ENST00000380526 729 ntBASIC20.56■□□□□ 0.88
NPHP4O75161 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP4O75161 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP4O75161 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC20.56■□□□□ 0.88
NPHP4O75161 KNOP1P1-201ENST00000542108 989 ntBASIC20.56■□□□□ 0.88
NPHP4O75161 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP4O75161 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NPHP4O75161 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP4O75161 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP4O75161 AD000864.1-201ENST00000624076 2295 ntBASIC20.56■□□□□ 0.88
NPHP4O75161 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP4O75161 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.56■□□□□ 0.88
NPHP4O75161 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP4O75161 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP4O75161 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPHP4O75161 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
NPHP4O75161 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPHP4O75161 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP4O75161 SAT1-201ENST00000379251 801 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP4O75161 SAT1-202ENST00000379253 909 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP4O75161 SAT1-203ENST00000379254 868 ntTSL 3 BASIC20.55■□□□□ 0.88
NPHP4O75161 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 AC092570.1-201ENST00000414446 469 ntBASIC20.55■□□□□ 0.88
NPHP4O75161 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP4O75161 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NPHP4O75161 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NPHP4O75161 IGHEP2-201ENST00000519308 1256 ntBASIC20.55■□□□□ 0.88
NPHP4O75161 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NPHP4O75161 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC20.55■□□□□ 0.88
NPHP4O75161 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP4O75161 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
NPHP4O75161 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 WASH7P-201ENST00000488147 1351 ntBASIC20.55■□□□□ 0.88
NPHP4O75161 AGGF1P1-201ENST00000509500 2073 ntBASIC20.55■□□□□ 0.88
NPHP4O75161 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP4O75161 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP4O75161 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP4O75161 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 CICP13-201ENST00000422015 2789 ntBASIC20.55■□□□□ 0.88
NPHP4O75161 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP4O75161 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
NPHP4O75161 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP4O75161 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms