Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
MSH5O43196 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
MSH5O43196 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH5O43196 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
MSH5O43196 AC016396.2-201ENST00000562575 1417 ntBASIC21.41■■□□□ 1.02
MSH5O43196 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
MSH5O43196 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 AC022417.1-201ENST00000624768 1303 ntBASIC21.41■■□□□ 1.02
MSH5O43196 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 RNU1-129P-201ENST00000384064 167 ntBASIC21.41■■□□□ 1.02
MSH5O43196 SNORD116-4-201ENST00000384733 96 ntBASIC21.41■■□□□ 1.02
MSH5O43196 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
MSH5O43196 AL589823.1-201ENST00000429577 183 ntBASIC21.41■■□□□ 1.02
MSH5O43196 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH5O43196 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC21.41■■□□□ 1.02
MSH5O43196 AL603839.3-201ENST00000450713 605 ntTSL 3 BASIC21.41■■□□□ 1.02
MSH5O43196 LINC00370-201ENST00000455487 698 ntTSL 3 BASIC21.41■■□□□ 1.02
MSH5O43196 AC093166.2-201ENST00000455969 1017 ntBASIC21.41■■□□□ 1.02
MSH5O43196 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH5O43196 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.41■■□□□ 1.02
MSH5O43196 RNU6-551P-201ENST00000516661 103 ntBASIC21.41■■□□□ 1.02
MSH5O43196 AC091820.1-201ENST00000523497 648 ntTSL 4 BASIC21.41■■□□□ 1.02
MSH5O43196 U1.21-201ENST00000580816 167 ntBASIC21.41■■□□□ 1.02
MSH5O43196 LINC00662-207ENST00000590677 883 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH5O43196 EAF1-AS1-205ENST00000595975 892 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH5O43196 Six3os1_5.1-201ENST00000611000 271 ntBASIC21.41■■□□□ 1.02
MSH5O43196 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.41■■□□□ 1.02
MSH5O43196 AC007967.4-201ENST00000614700 386 ntBASIC21.41■■□□□ 1.02
MSH5O43196 MIR6805-201ENST00000615055 62 ntBASIC21.41■■□□□ 1.02
MSH5O43196 AL121890.3-201ENST00000618494 516 ntBASIC21.41■■□□□ 1.02
MSH5O43196 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
MSH5O43196 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH5O43196 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
MSH5O43196 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH5O43196 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC21.4■■□□□ 1.02
MSH5O43196 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
MSH5O43196 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 RNU5E-4P-201ENST00000364931 120 ntBASIC21.4■■□□□ 1.02
MSH5O43196 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 AP006294.1-201ENST00000415407 339 ntBASIC21.4■■□□□ 1.02
MSH5O43196 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC21.4■■□□□ 1.02
MSH5O43196 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 OR5H3P-201ENST00000502817 919 ntBASIC21.4■■□□□ 1.02
MSH5O43196 RN7SKP287-201ENST00000516546 266 ntBASIC21.4■■□□□ 1.02
MSH5O43196 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21.4■■□□□ 1.02
MSH5O43196 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH5O43196 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 POLE2-203ENST00000553805 496 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 AC005034.5-201ENST00000604219 466 ntBASIC21.4■■□□□ 1.02
MSH5O43196 AC006273.1-201ENST00000606966 861 ntBASIC21.4■■□□□ 1.02
MSH5O43196 AL163152.1-201ENST00000642001 374 ntBASIC21.4■■□□□ 1.02
MSH5O43196 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
MSH5O43196 AL359258.3-201ENST00000622910 2331 ntBASIC21.4■■□□□ 1.02
MSH5O43196 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH5O43196 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
MSH5O43196 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
MSH5O43196 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC21.39■■□□□ 1.02
MSH5O43196 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH5O43196 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC21.39■■□□□ 1.02
MSH5O43196 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC21.39■■□□□ 1.02
MSH5O43196 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.39■■□□□ 1.01
MSH5O43196 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC21.39■■□□□ 1.01
MSH5O43196 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
MSH5O43196 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 AL512384.1-201ENST00000406683 331 ntBASIC21.39■■□□□ 1.01
MSH5O43196 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH5O43196 AC009365.1-201ENST00000436379 751 ntTSL 2 BASIC21.39■■□□□ 1.01
MSH5O43196 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC21.39■■□□□ 1.01
MSH5O43196 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC21.39■■□□□ 1.01
MSH5O43196 GNAQP1-201ENST00000444815 1067 ntBASIC21.39■■□□□ 1.01
MSH5O43196 HLA-V-204ENST00000476601 1289 ntBASIC21.39■■□□□ 1.01
MSH5O43196 OR7E26P-201ENST00000502808 1006 ntBASIC21.39■■□□□ 1.01
MSH5O43196 ARHGEF38-IT1-201ENST00000512262 456 ntTSL 3 BASIC21.39■■□□□ 1.01
MSH5O43196 MTATP6P15-201ENST00000527233 835 ntBASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms