Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXN3O00409 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXN3O00409 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXN3O00409 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXN3O00409 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXN3O00409 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXN3O00409 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
FOXN3O00409 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
FOXN3O00409 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
FOXN3O00409 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.14■□□□□ 0.18
FOXN3O00409 LRRC59-203ENST00000576448 1531 ntBASIC16.14■□□□□ 0.18
FOXN3O00409 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.14■□□□□ 0.17
FOXN3O00409 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXN3O00409 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 AC117489.1-201ENST00000625169 3217 ntBASIC16.14■□□□□ 0.17
FOXN3O00409 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXN3O00409 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXN3O00409 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXN3O00409 ACTBP8-201ENST00000403258 1108 ntBASIC16.14■□□□□ 0.17
FOXN3O00409 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 AL162726.2-201ENST00000438986 1017 ntBASIC16.14■□□□□ 0.17
FOXN3O00409 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXN3O00409 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.14■□□□□ 0.17
FOXN3O00409 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
FOXN3O00409 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXN3O00409 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
FOXN3O00409 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXN3O00409 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXN3O00409 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
FOXN3O00409 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXN3O00409 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXN3O00409 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXN3O00409 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
FOXN3O00409 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
FOXN3O00409 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.13■□□□□ 0.17
FOXN3O00409 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.13■□□□□ 0.17
FOXN3O00409 HMGN1P19-201ENST00000436976 333 ntBASIC16.13■□□□□ 0.17
FOXN3O00409 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 AC022137.2-201ENST00000503482 481 ntBASIC16.13■□□□□ 0.17
FOXN3O00409 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 RPSAP52-203ENST00000622976 1023 ntBASIC16.13■□□□□ 0.17
FOXN3O00409 AL603764.1-201ENST00000636452 321 ntBASIC16.13■□□□□ 0.17
FOXN3O00409 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
FOXN3O00409 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
FOXN3O00409 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXN3O00409 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXN3O00409 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXN3O00409 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXN3O00409 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXN3O00409 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXN3O00409 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXN3O00409 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXN3O00409 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXN3O00409 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXN3O00409 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms