Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
UPF3BQ9BZI7 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.06■□□□□ 0.48
UPF3BQ9BZI7 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
UPF3BQ9BZI7 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.04■□□□□ 0.48
UPF3BQ9BZI7 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms