Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.95■□□□□ 0.94
USP47Q96K76 AC010141.1-201ENST00000411585 623 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 AC079178.1-201ENST00000420915 656 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 HSPB1P2-201ENST00000448722 546 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 Z93015.1-201ENST00000451718 390 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 RPSAP36-202ENST00000494591 1261 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
USP47Q96K76 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.95■□□□□ 0.94
USP47Q96K76 MIR6787-201ENST00000616675 61 ntBASIC20.95■□□□□ 0.94
USP47Q96K76 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP47Q96K76 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
USP47Q96K76 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
USP47Q96K76 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USP47Q96K76 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.94■□□□□ 0.94
USP47Q96K76 MTX1P1-201ENST00000440904 838 ntBASIC20.94■□□□□ 0.94
USP47Q96K76 GOLGA2P4-201ENST00000441462 777 ntBASIC20.94■□□□□ 0.94
USP47Q96K76 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.94■□□□□ 0.94
USP47Q96K76 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20.94■□□□□ 0.94
USP47Q96K76 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.94■□□□□ 0.94
USP47Q96K76 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC20.94■□□□□ 0.94
USP47Q96K76 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC20.94■□□□□ 0.94
USP47Q96K76 AC005695.3-201ENST00000614522 232 ntBASIC20.94■□□□□ 0.94
USP47Q96K76 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20.94■□□□□ 0.94
USP47Q96K76 AC092135.3-201ENST00000624151 1846 ntBASIC20.94■□□□□ 0.94
USP47Q96K76 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC20.94■□□□□ 0.94
USP47Q96K76 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP47Q96K76 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
USP47Q96K76 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
USP47Q96K76 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC20.93■□□□□ 0.94
USP47Q96K76 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
USP47Q96K76 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
USP47Q96K76 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC20.93■□□□□ 0.94
USP47Q96K76 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
USP47Q96K76 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 MIR326-201ENST00000362220 95 ntBASIC20.93■□□□□ 0.94
USP47Q96K76 MIR1908-201ENST00000410394 80 ntBASIC20.93■□□□□ 0.94
USP47Q96K76 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC20.93■□□□□ 0.94
USP47Q96K76 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.93■□□□□ 0.94
USP47Q96K76 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 BX088702.1-201ENST00000610784 235 ntBASIC20.93■□□□□ 0.94
USP47Q96K76 GPR182-203ENST00000622922 591 ntBASIC20.93■□□□□ 0.94
USP47Q96K76 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.93■□□□□ 0.94
USP47Q96K76 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP47Q96K76 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USP47Q96K76 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC20.92■□□□□ 0.94
USP47Q96K76 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP47Q96K76 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 GSN-203ENST00000373808 2664 ntTSL 2 BASIC20.92■□□□□ 0.94
USP47Q96K76 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.92■□□□□ 0.94
USP47Q96K76 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 AC100850.1-201ENST00000506768 649 ntBASIC20.92■□□□□ 0.94
USP47Q96K76 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP47Q96K76 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms