Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AL360270.3-201ENST00000609118 1348 ntBASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AL139400.1-201ENST00000366220 510 ntBASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 NUS1P3-201ENST00000423502 862 ntBASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AP000347.1-202ENST00000435868 847 ntBASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AC109322.1-201ENST00000524499 1264 ntBASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AC004449.1-201ENST00000564240 433 ntBASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CCDC54Q8NEL0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 GAPDHP40-201ENST00000505218 1006 ntBASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 AL844908.2-201ENST00000609461 460 ntBASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CCDC54Q8NEL0 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms