Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMC1BQ8NDV3 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SMC1BQ8NDV3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SMC1BQ8NDV3 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SMC1BQ8NDV3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.71■□□□□ 0.42
SMC1BQ8NDV3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 INE2-201ENST00000630399 1874 ntBASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 NME4-203ENST00000397722 1232 ntTSL 2 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 AL353622.2-201ENST00000605846 425 ntBASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.7■□□□□ 0.42
SMC1BQ8NDV3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AC021305.1-201ENST00000520656 1514 ntBASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AC006122.1-201ENST00000493323 440 ntBASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 NEU3-207ENST00000534628 746 ntTSL 2 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AC138701.2-201ENST00000553634 226 ntBASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 AC010632.2-201ENST00000588369 1224 ntBASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC17.69■□□□□ 0.42
SMC1BQ8NDV3 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 HLA-DQB1-202ENST00000399079 1501 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 AL672207.1-201ENST00000328462 1570 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 GUSBP10-201ENST00000417412 665 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms