Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AC107918.4-201ENST00000641966 3141 ntBASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.59□□□□□ -0.07
PPP4R4Q6NUP7 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.07
PPP4R4Q6NUP7 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PPP4R4Q6NUP7 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.58□□□□□ -0.07
PPP4R4Q6NUP7 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.58□□□□□ -0.07
PPP4R4Q6NUP7 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
PPP4R4Q6NUP7 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 AC069120.2-201ENST00000524091 540 ntBASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 AL390754.1-201ENST00000619088 582 ntBASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
PPP4R4Q6NUP7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AC126335.2-201ENST00000623362 4637 ntBASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 FAM220BP-201ENST00000377689 816 ntBASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 MIR770-201ENST00000390219 98 ntBASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AC011467.4-201ENST00000594891 528 ntBASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AC084121.4-201ENST00000641598 221 ntBASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AF228730.8-201ENST00000642140 221 ntBASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.57□□□□□ -0.08
PPP4R4Q6NUP7 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms