Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AL442647.2-201ENST00000429864 857 ntBASIC17.22■□□□□ 0.35
ATL3Q6DD88 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 KRT8P22-201ENST00000562317 1415 ntBASIC17.21■□□□□ 0.35
ATL3Q6DD88 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AL512638.1-201ENST00000457493 794 ntBASIC17.21■□□□□ 0.35
ATL3Q6DD88 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 MIR6074-201ENST00000612054 107 ntBASIC17.21■□□□□ 0.35
ATL3Q6DD88 AC004790.1-201ENST00000612686 536 ntBASIC17.21■□□□□ 0.35
ATL3Q6DD88 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATL3Q6DD88 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 AC090505.1-201ENST00000430515 1834 ntBASIC17.21■□□□□ 0.35
ATL3Q6DD88 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ATL3Q6DD88 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
ATL3Q6DD88 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ATL3Q6DD88 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
ATL3Q6DD88 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ATL3Q6DD88 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 MRPS18AP1-201ENST00000414458 589 ntBASIC17.2■□□□□ 0.34
ATL3Q6DD88 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 AC026434.2-201ENST00000506094 1078 ntBASIC17.2■□□□□ 0.34
ATL3Q6DD88 AC093004.1-201ENST00000508850 424 ntBASIC17.2■□□□□ 0.34
ATL3Q6DD88 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC17.2■□□□□ 0.34
ATL3Q6DD88 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ATL3Q6DD88 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms