Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 AP001889.1-201ENST00000525414 633 ntBASIC18.26■□□□□ 0.51
VPS53Q5VIR6 AC068587.3-201ENST00000526613 355 ntBASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 AL137783.1-201ENST00000623494 1896 ntBASIC18.26■□□□□ 0.51
VPS53Q5VIR6 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS53Q5VIR6 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 AC134312.5-201ENST00000568031 1313 ntBASIC18.25■□□□□ 0.51
VPS53Q5VIR6 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 BAATP1-201ENST00000412284 1225 ntBASIC18.25■□□□□ 0.51
VPS53Q5VIR6 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 U91328.1-201ENST00000437528 223 ntBASIC18.25■□□□□ 0.51
VPS53Q5VIR6 KRT17P7-201ENST00000451704 1104 ntBASIC18.25■□□□□ 0.51
VPS53Q5VIR6 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 SLC25A47P1-201ENST00000531577 414 ntBASIC18.25■□□□□ 0.51
VPS53Q5VIR6 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VPS53Q5VIR6 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 AC232323.1-201ENST00000540724 2099 ntBASIC18.24■□□□□ 0.51
VPS53Q5VIR6 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 LINC00552-201ENST00000625151 2579 ntBASIC18.24■□□□□ 0.51
VPS53Q5VIR6 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 EIF3FP3-201ENST00000434851 1086 ntBASIC18.24■□□□□ 0.51
VPS53Q5VIR6 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 AC009486.1-201ENST00000569860 813 ntBASIC18.24■□□□□ 0.51
VPS53Q5VIR6 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 GNRHR2-203ENST00000581100 1187 ntBASIC18.24■□□□□ 0.51
VPS53Q5VIR6 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 CICP14-201ENST00000629111 2732 ntBASIC18.24■□□□□ 0.51
VPS53Q5VIR6 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS53Q5VIR6 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms